PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009930-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 270aa    MW: 30036.2 Da    PI: 7.2363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009930-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++W +eE+e l  +++++G g Wk+I +  +       R+  ++k++w++
  AHYPO_009930-RA  5 KQKWKPEEEEALRAGIAKHGHGKWKLIKEDPQfyeflSSRSNVDLKDKWRN 55
                     79***********************************9************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.216161IPR017930Myb domain
SuperFamilySSF466897.49E-16262IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-16462IPR009057Homeodomain-like
PfamPF002491.0E-8555IPR001005SANT/Myb domain
CDDcd116604.80E-20656No hitNo description
SMARTSM005265.2E-7109174IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-8110181IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-10110184IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150414.468111179IPR005818Linker histone H1/H5, domain H15
PfamPF005381.7E-6113173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGNPKQKWKP EEEEALRAGI AKHGHGKWKL IKEDPQFYEF LSSRSNVDLK DKWRNIYKER  60
IKITKPKTIQ DGPATSLISH SDATLSGSGV HQLAADHFKD ESANGIPDAK NVPRYDEFIF  120
EALSTVKEQL GLDIVSLVAY IEERMEVPQN FRKHLGGRLR RLVRQGKLDK VDGLFSLKNN  180
YVHTNASNKG GLSRQSFTTA NLNIDVMLEE AAKTAAYKVF EAETLSYVAA DSVAEAEKMM  240
KLAEETDSIM QLAKGILDGC TNGEIILVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696540.11e-104PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A0J8B7681e-104A0A0J8B768_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-44MYB_related family protein